TODO

Errors

  1. GPU node do not see cuda:0,1. Probably it’s something related to how I launch the scripts and the env variables

Doc to write

  1. index.md
  2. BC_software.md
  3. BC_scripts.md
  4. Basecalling-pipeline.md
  5. Configuration.md: add example

Doc final structure:

  1. index.md: In the index.md explains the structure and then the Installation procedure + the usage procedure
    it’s a intro
  2. config.json: first thing that needs to be explained is how to setup the json. All the options explained in a precise way. The user will work with this!
  3. basecalling-pipeline: what will happen. From start to finish. Here I’all also the report ?
  4. BC_software: the core
  5. BC_scripts: the auxiliary files required for working

Features to implement

  1. Final report construction
  2. Send report to user
  3. JSON check to see if it’s compatible ?
  4. Adding modifiable number of clients for ont supervisor. Now fixed to 5
  5. Live reading trigger from an input directory

Observations

  • I need launch the server, BCM and BCP on the same dir in order to have the supervisor being able to find the connection file ?